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Frontiers in Neuroimaging

Frontiers Media SA

Preprints posted in the last 7 days, ranked by how well they match Frontiers in Neuroimaging's content profile, based on 11 papers previously published here. The average preprint has a 0.01% match score for this journal, so anything above that is already an above-average fit.

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Accelerated MCDW-pCASL Using Subspace Low-Rank Reconstruction for Quantification of BBB Water Exchange and Permeability

Liu, Z.; Zhao, C.; Huang, Z.; Guo, F.; Wang, D. J.; Shao, X.

2026-07-16 radiology and imaging 10.64898/2026.07.13.26357046 medRxiv
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Purpose: To develop an accelerated motion-compensated diffusion-weighted pseudo-continuous arterial spin labeling (MCDW-pCASL) method using a spatial subspace low-rank reconstruction method for efficient quantification of blood-brain barrier (BBB) water exchange (kw) and permeability (PSw). Methods: An accelerated multidelay MCDW-pCASL sequence was developed to simultaneously encode intravascular and extravascular diffusion-weighted ASL signals across multiple post-labeling delays (PLDs). A spatial subspace low-rank reconstruction framework was optimized to enable joint estimation of cerebral blood flow (CBF) and BBB water exchange rate and permeability. Fourteen young healthy adults underwent test-retest scans (separated by ~1 week) at 3T with both the accelerated MCDW-pCASL and a conventional diffusion-prepared (DP) pCASL sequence. Whole-brain, gray-matter, and white-matter CBF and kw values were quantified to assess test-retest repeatability and cross-method agreement. An additional cohort of 30 older adults underwent single-session MCDW and DP scans to evaluate age-related perfusion and BBB kw/PSw differences. Intraclass correlation coefficients (ICCs) were used to assess reliability and agreement. Results: Accelerated MCDW-pCASL demonstrated excellent agreement with DP-pCASL for CBF (ICC = 0.89) and fair agreement for kw (ICC = 0.56). Test-retest repeatability of MCDW-pCASL was good for CBF, BBB kw and PSw (ICC {approx} 0.6). Across both sequences, younger subjects exhibited significantly higher CBF and kw compared with older adults. Conclusion: Incorporating a spatial low-rank subspace reconstruction enables accelerated MCDW-pCASL acquisition with reliable simultaneous quantification of CBF, BBB kw and PSw. Clinical applications of this method for assessing perfusion and BBB function are warranted.

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Hyperbolic Brain Modelling and Neurocognitive Decline Analysis for Disease Detection

Mukhopadhyay, A.; Halder, K.; Neogy, R.

2026-07-15 neuroscience 10.64898/2026.07.09.737540 medRxiv
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Mapping hierarchical brain networks within traditional Euclidean space causes significant structural distortion, undermining neuroimaging diagnostic frameworks. While hyperbolic models like the Poincare ball preserve these nested topologies, they demand heavy computational overhead due to intricate Mobius operations and curved geodesics. This paper introduces a highly efficient non-Euclidean framework for analyzing neurocognitive decline utilizing the Beltrami-Klein ball model. By projecting hyperbolic geodesics as Euclidean straight lines, this approach converts complex distance calculations into simple dot products, radically reducing processing demands. We validated our methodology against state-of-the-art Poincare and Lorentz baselines using datasets for Schizophrenia, Parkinsons Disease, and Alzheimers Disease. The Klein-based framework demonstrates superior performance, delivering both higher diagnostic precision and accelerated processing velocities across all three neurocognitive disorders.

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Brain Structural and Resting-state Functional Network Changes Following Expiratory Musculature Targeted Resistance Training in Healthy Young Adults: A Pilot Study

Krishnamurthy, R.; Schultz, D.; Wang, Y.; Barlow, S. M.; Dietsch, A. M.

2026-07-15 neuroscience 10.64898/2026.07.09.737407 medRxiv
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Multimodal imaging approaches that combine structural and functional neuroimaging provide a robust framework for examining neuroplastic adaptations that may not be captured by any single modality. The present study investigated the effects of a four-week expiratory muscle strength training (EMST) program on structural and resting-state functional connectivity in healthy young adults. Five healthy young adult males (aged 19-35 years) completed a standard four-week EMST protocol and underwent pre- and post-training imaging assessments. Structural neuroimaging included T1-weighted and diffusion-weighted MRI, which were analyzed using voxel-based morphometry, surface-based morphometry, and white-matter structural connectivity. Functional neuroimaging consisted of resting-state fMRI to assess training-related changes in functional architecture, network connectivity, and global network measures. Structural MRI analyses revealed no significant changes in gray or white matter volume, cortical morphology, or white-matter structural connectivity following EMST (all FWE- or FDR-corrected p > .05). In contrast, resting-state fMRI demonstrated a significant increase in whole-brain functional connectivity (FDR-corrected p = .036), accompanied by greater network integration, reflected in increased local efficiency and transitivity and reduced modularity. Network-level analyses showed enhanced within- and between-network connectivity in sensorimotor and cognitive circuits. Our findings demonstrate robust functional reorganization following EMST, despite the absence of detectable macrostructural or large-scale white-matter connectivity changes, at least within the timescale and sample characteristics of the current study. These results reflect early-stage neuroplasticity, both globally and within the networks underlying speech and swallowing control and suggest that functional reorganization occurs early in training and likely precedes longer-term structural modifications in these networks.

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Identification of Persistent Radiomics Feature Co-occurrence Across Diverse Tissue Types and Individuals: A Network-Based Analysis of the RADAPT CT Atlas

Amiri, S.; Afshar, P.; Rohban, M. H.

2026-07-19 radiology and imaging 10.64898/2026.07.17.26358252 medRxiv
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Objectives. Radiomics pipelines extract hundreds of quantitative features that are widely known to be redundant, but the structure of this redundancy is usually treated as a per-dataset nuisance to be pruned away. We tested the alternative hypothesis that a substantial number of feature-feature correlations are universal: they persist across patients and across anatomically distinct structures because they reflect shared mathematical and image-statistical properties of how the image is summarised, rather than properties of the tissue being imaged. Materials and Methods. We re-analysed the publicly available Radiomics Atlas Dataset of normal Abdominal and Pelvic CT (RADAPT), restricting the analysis to the 526 non-contrast-enhanced examinations of the 531-subject atlas and to the 107 original (non-filtered) PyRadiomics features. The 53 segmented structures were grouped into four broad anatomical categories -- bones, muscles, vessels, and parenchymal organs. RADAPT is distributed as one Excel file per structure, with patients as rows and features as columns. Within each structure file we z-score-normalised every feature across patients, computed the absolute Spearman correlation matrix, and retained edges with |{rho}| [≥] {tau} for {tau} in {0.70, 0.80, 0.90}. We then intersected the edge sets across all structure files to obtain a "universal" correlation graph, in which an edge survives only if it exceeds the threshold in every structure (each estimated across the full patient sample). Stable feature communities were defined as the maximal cliques of this graph. Robustness to patient sampling was tested by repeating the entire pipeline on five independent random splits of each file into two patient halves (10 sub-cohorts per threshold), and the implementation was independently reproduced in R. Results. Despite the strictness of the global-intersection criterion, 34, 24, and 14 stable feature communities survived at {tau} = 0.70, 0.80, and 0.90 respectively, with the largest cliques containing six members at {tau} = 0.70 and {tau} = 0.80 and five members at {tau} = 0.90. The community structure was clearly interpretable: separate cliques captured (i) variance-like intensity dispersion, (ii) long-run / low-frequency (coarse) texture, (iii) high gray-level texture, (iv) low gray-level texture, (v) volume and surface shape, and (vi) local-homogeneity and energy/entropy duals. On random-half resampling the exact-match recovery rate of these communities was 81.5 %, 86.7 %, and 80.7 % across the three thresholds; departures from exact recovery were almost always a single boundary feature added or dropped, consistent with finite-sample fluctuation of near-threshold edges rather than structural instability. The R re-implementation reproduced the Python results exactly. Conclusion. A substantial portion of radiomics feature collinearity is universal across patients and tissues. We distinguish two layers within it: trivial near-algebraic duals that are universal by construction, and non-trivial cross-matrix-family communities that are the genuine empirical finding. Together they provide an interpretable, definition-grounded basis for aggressive dimensionality reduction, for retrospectively reconciling apparently different feature selections in the literature, and for moving radiomics pipelines toward organ-agnostic, more reproducible models. Clinical relevance statement. Selecting a single representative feature from each universal community shrinks the original-feature space by roughly an order of magnitude without sacrificing biologically distinct information. For example, the five variance-family members (first-order Variance, GLCM SumSquares, GLCM ClusterTendency, GLDM and GLRLM GrayLevelVariance) can be replaced by a single representative, removing redundant degrees of freedom that would otherwise inflate model variance; and labelling each retained feature by its community lets two studies that selected different variance-family names be recognised as having found the same signal, simplifying model development and improving cross-cohort generalisability in clinical CT workflows.

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A Culturally Embedded Augmented Reality Task as a Neurocognitive Biomarker of Executive Function in Schizophrenia

Chatthong, W.; Rueankam, M.; Khemthong, S.

2026-07-16 psychiatry and clinical psychology 10.64898/2026.07.14.26358053 medRxiv
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Executive function (EF) deficits are central features of schizophrenia and strongly influence long-term functional outcomes. Conventional cognitive assessments often lack ecological validity and cultural relevance. This study introduces the Luk Chup Augmented Reality (LCAR) tool a video guided, clay modeling task delivered through wearable AR that integrates culturally familiar activity with realtime neurophysiological monitoring. Thirty individuals diagnosed with schizophrenia (mean age = 38.9, SD. = 7.15 years) completed a series of modeling and memory tasks using LCAR while undergoing quantitative EEG (QEEG). Task duration and theta/beta power were analyzed across procedural and color shape memory phases. Memory phases took significantly longer to complete and were associated with decreased lateral prefrontal theta and increased frontal midline theta activity (Fz, Cz), indicating higher EF demand. A repeated-measures ANOVA revealed significant condition, site, and interaction effects on theta power. The LCAR tool shows promise as a culturally grounded, dual-mode assessment of EF in schizophrenia. It offers a novel integration of performance-based and neurophysiological metrics that may inform future interventions in psychiatric rehabilitation.

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Across-Site MRI Prediction of Substantial Lymphovascular Space Invasion in Endometrial Cancer: Radiomics versus Deep Learning Features

Di Giovanni, D. A.; Tanaka, A.; Horikoshi, T.; Tsuboyama, T.; Yokota, H.; Zakarian, R.; Matsumoto, Y.; Vallieres, M.; Reinhold, C.

2026-07-16 radiology and imaging 10.64898/2026.07.14.26358100 medRxiv
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Purpose: To compare the cross-site generalization of radiomic features and deep learning embeddings for MRI prediction of substantial lymphovascular space invasion (LVSI) in endometrial cancer. Materials and Methods: This retrospective two-center study included 206 women (mean age, 59.8 years) with endometrial cancer who underwent preoperative 3-T MRI from March 2016 to March 2023. Hospital A (n = 130) was used for development and Hospital B (n = 76) for strict external testing. T2-weighted, reduced field-of-view diffusion-weighted, and apparent diffusion coefficient images were manually segmented. Radiomic features and seed-pooled embeddings from 3D ResNet18, DenseNet121, and U-NEXtractor were modeled with elastic-net logistic regression or XGBoost. Out-of-fold Platt calibration and sensitivity-targeted thresholds were estimated using development data only. AUCs were summarized with 95% bootstrap confidence intervals. Results: External radiomics with elastic-net achieved an AUC of 0.609 (95% CI: 0.464, 0.740) and sensitivity of 0 of 12 (0%). DenseNet121 with elastic-net had the highest external AUC (0.685; 95% CI: 0.538, 0.822) but sensitivity of 3 of 12 (25%). U-NEXtractor with elastic-net detected 10 of 12 positive cases (83.3%) with specificity of 32 of 64 (50.0%) and balanced accuracy of 0.667. XGBoost showed higher apparent development performance but weaker external operating behavior. Conclusion: Under real-world cross-site MRI acquisition shift, DenseNet121 and U-NEXtractor embeddings showed better external generalization than handcrafted radiomic features for substantial LVSI prediction.

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Toward multimodal MRI biomarkers of PTSD: functional and structural connectivity signatures in WTC responders

Invernizzi, A.; Folloni, D.; Rechtman, E.; Santiago-Michels, S.; Lucchini, R. G.; Luft, B. J.; Clouston, S.; Tang, C. Y.; Horton, M.

2026-07-15 occupational and environmental health 10.64898/2026.07.13.26357932 medRxiv
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Background: Post-traumatic stress disorder (PTSD) remains highly prevalent affecting ~23% of World Trade Center (WTC) responders more than two decades after 9/11. While MRI studies have identified neural differences associated with PTSD, these findings have not translated into improved treatment. We introduce a novel multimodal MRI approach, DAta-driven Network Connectivity Estimate (DANCE), integrating structural and functional magnetic resonance imaging (MRI) to better capture PTSD mechanisms and inform biomarkers. Methods: In 96 WTC responders , including 45 with current WTC-related PTSD and 51 without PTSD. We applied graph theory to resting-state functional MRI to identify functional hubs via eigenvector centrality and identified divergence between groups using partial least squares discriminant analysis (PLS-DA). From diffusion MRI, we reconstructed five anatomical tracts (i.e., streamlines) in the temporal lobes. Using DANCE, we quantified the differential distribution of streamlines of the reconstructed tracts connecting the functional hubs. We then tested whether WTC exposure duration moderated associations between PTSD and DANCE indices. Results: Responders with PTSD showed altered centrality in nine functional hubs (AUC=0.75 (0.651-0.847)) including bilateral anterior inferior temporal gyrus, right superior parietal lobule, right anterior parahippocampal gyrus, right anterior/posterior superior temporal gyrus (STG), right caudate nucleus, left amygdala and brainstem. Connectivity differences emerged in four tracts: hippocampus, parahippocampus, inferior and superior temporal gyri (STG). DANCE differed in the inferior fronto-occipital fasciculus (IFOF), medial (IFLmed) and lateral (IFLlat) components of the inferior longitudinal fasciculus and in the middle longitudinal fascicle (MdLF). WTC exposure duration significantly moderated the association between PTSD and DANCE values in the IFLmed, right posterior STG (p= 0.035). Conclusion: Our novel DANCE approach revealed converging functional and anatomical connectivity alterations uniquely associated with PTSD in WTC responders and offers compelling evidence for distinct neurobiological signatures of the disorder. These findings significantly advance our understanding of PTSD pathophysiology and highlight potential biomarkers for diagnosis and targeted intervention.

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Electrophysiological features of signals recorded from white matter

Jafri, R.; Ortega, F. A.; Manivannan, P.; Jourahmad, Z.; Devara, D.; Mattar, L.; Krishna, S.; Liu, G.; Chamarthi, S.; Goldman, A. M.; Lin, L.; Krishnan, V.; Maheshwari, A.; Banks, G. P.; Hasen, M.; Paulo, D.; Watrous, A. J.; Hayden, B. Y.; Yau, J.; Sheth, S. A.; Provenza, N. R.; Murphy, N.; Heilbronner, S. R.; Bartoli, E.

2026-07-15 neuroscience 10.64898/2026.07.11.737939 medRxiv
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Intracranial neurophysiology studies have typically ignored signals from electrodes located in white matter (WM), assuming that their information content is artifactual or related to nearby gray matter (GM). Here, we tested the electrophysiological and functional features of signals recorded from different WM locations. Signals were recorded from 19 patients undergoing intracranial monitoring for drug-resistant epilepsy by means of stereo-electroencephalography (sEEG). Each sEEG electrode was classified into WM or GM based on the surrounding tissue. We obtained recordings from a total of 1,717 sEEG electrode contacts, 36% in WM, while the patients were in awake resting state (5 minutes). For each sEEG electrode, we employed a model-based spectral decomposition to separate periodic and aperiodic components, and we computed signal complexity metrics. For a subset of participants, we computed WM structural information from diffusion-weighted magnetic resonance imaging and we evaluated functional signals during a cognitive control task. Our results show that signals recorded from WM have different spectral features and higher complexity than GM. Complexity correlates positively with fractional anisotropy, and modulations related to behavior during the task were detected in WM. Overall, this indicates that WM signals carry information that may reflect signal propagation across WM fiber tracts.

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Life-Stage Heterogeneity in the Mental Health Treatment Gap: An Unsupervised Machine Learning Profiling of Symptomatic US Adults

Forday, W. L.

2026-07-15 psychiatry and clinical psychology 10.64898/2026.07.14.26358030 medRxiv
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Abstract Background Despite a rising global psychiatric burden, a treatment gap persists where the majority of symptomatic individuals remain unmedicated. Traditional epidemiological analyses treat this untreated population as a single, uniform block, obscuring specific barriers to care. This study uses an unsupervised machine learning pipeline to identify distinct socio-behavioural and biological sub-populations within the untreated cohort to guide targeted public health interventions. Methods Data were pooled from the 2015-2018 National Health and Nutrition Examination Survey (NHANES) cycles (N=11,848 total adult respondents). A symptomatic cohort of 3,075 individuals experiencing daily or weekly anxiety or depression symptoms was isolated, excluding severe liver pathology outliers ("GGT"[≥]80" U/L" ). A 22-feature matrix combining continuous clinical biomarkers (systolic blood pressure, waist circumference, HbA1c) and categorical social variables was projected using Factor Analysis of Mixed Data (FAMD). Latent sub-populations were identified via Gaussian Mixture Modelling (GMM), optimized by the Bayesian Information Criterion (BIC). Results The broad baseline population revealed a substantial mental health burden, with 30.4% reporting active psychiatric symptoms, of whom 71.6% were entirely unmedicated. The GMM pipeline successfully isolated three distinct sub-populations (k=3) separated by age, clinical strain, and treatment rates: Cluster 0 (Mature Adults, mean age 55.03): high psychiatric severity (34.1% severe untreated), central obesity, and hypertensive strain (135.82 mmHg), with 64.1% untreated despite frequent primary care contact; Cluster 1 (Working Professionals, mean age 38.38): highly educated, female-dominated (70.5%), with 77.7% untreated driven by moderate distress; Cluster 2 (Emerging Youth, mean age 18.49): a highly vulnerable late-adolescent group with a staggering 90.2% untreated rate. Conclusion The unmedicated symptomatic population is highly diverse and segmented by life stage. These profiles show that the treatment gap is driven by age-specific barriers, specifically workforce-age symptom masking and late-adolescent developmental transitions. Closing this deficit requires shifting from uniform public health approaches toward targeted interventions, such as digital peer support networks for youth and integrated primary care screenings for older adults.

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Statistical Inference and Power Analysis for Comparative F1 and Fβ Scores under Correlated Classifier Pairs

Hsu, C.-Y.; Liu, Q.; Shyr, Y.

2026-07-17 dermatology 10.64898/2026.07.15.26358166 medRxiv
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As machine learning and artificial intelligence systems are increasingly used in healthcare, rigorous evaluation of their classification performance has become critical. The F1 and F{beta} scores are widely adopted metrics for assessing performance in imbalanced biomedical data. Recently, we introduced psF1, a unified statistical framework for inference and study design for single and comparative F1 and F{beta} scores under the assumption of independent classifiers. In practice, however, benchmarking two classifiers on the same dataset creates a correlated paired setting. Ignoring this intrinsic dependency leads to overestimation of the standard error and a substantial loss of statistical power. To address this, we develop psF1pair, an advanced framework for statistical inference and power analysis that explicitly accounts for correlations between classifier pairs. Extensive simulation studies demonstrate the performance of psF1pair, and its utility is further illustrated through application to a real-world imaging classification system. As expected, higher correlation between classifiers yields narrower confidence intervals and enhanced statistical power. A freely available R package is provided to facilitate implementation, supporting accurate evaluation and study design for predictive and classification models in biomedical research.

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Parameter-efficient deep learning for pneumonia detection on chest X-rays: A comparative evaluation of explainable AI methods

Mahtabi, B.; Nasr-Esfahani, E.; Yaraghi, S.

2026-07-16 radiology and imaging 10.64898/2026.07.14.26358065 medRxiv
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Pneumonia is a leading cause of infectious disease mortality worldwide, accounting for approximately 2.5 million deaths annually and 15% of deaths in children under five. Chest X-ray imaging remains the primary diagnostic tool, but accurate interpretation requires radiological expertise that is disproportionately concentrated in high-income settings, creating a diagnostic gap where disease burden is highest. Automated deep learning offers a scalable complement to specialist-dependent diagnosis, yet clinical adoption requires both high accuracy and transparent, interpretable reasoning. Convolutional neural networks (CNNs) have shown strong potential for pneumonia detection from chest X-rays, but two barriers impede clinical translation: the interpretability of black-box models and the computational feasibility of large architectures in resource-constrained settings. Explainable AI (XAI) methods such as Grad-CAM, Grad-CAM++, and Score-CAM address the interpretability barrier, yet systematic quantitative comparisons across multiple CNN architectures remain scarce. Furthermore, CNN architectures widely used for medical image classification carry high parameter counts that limit feasibility in resource-constrained settings, motivating architectures that achieve competitive accuracy with substantially fewer parameters. Here we propose a parameter-efficient deep learning framework for pneumonia detection based on transfer learning, evaluated across three CNN architectures representing distinct architectural families: EfficientNet-B0 with fine-tuning (proposed method), ResNet50, and DenseNet121, trained under identical conditions on the Kaggle chest X-ray dataset (5,863 images). Our method achieved 90% classification accuracy, outperforming both baselines while requiring 4.8x fewer parameters than ResNet50. To evaluate explainability, Grad-CAM, Grad-CAM++, and Score-CAM were applied across all three architectures and compared quantitatively using Intersection over Union against manually annotated lung segmentation masks, Insertion score, and Deletion score, with pairwise statistical validation via Wilcoxon signed-rank tests and Bonferroni correction. Findings show that classification accuracy and XAI explanation quality must be evaluated independently, and that the proposed parameter-efficient architecture offers a favorable trade-off for resource-constrained clinical deployment.

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Prompt Engineering Limitations: Preliminary Evaluation of Large Language Models for Psychotherapy Safety

Ngo, N.; Dao, G.; Sano, A.

2026-07-18 psychiatry and clinical psychology 10.64898/2026.07.16.26358261 medRxiv
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Large Language Models are increasingly used in consumer-facing mental health tools, many of which claim that prompt engineering alone can ensure safe therapeutic behavior. This study evaluates that assumption by testing 20 proprietary and open-source LLMs on high-risk psychiatric scenarios, using prompts grounded in behavioral therapy principles. Prompt engineering reduced some predictable risks, such as explicit endorsement of self-harm, but consistently failed in ambiguous or clinically nuanced situations. Models frequently validated harmful statements, colluded with hallucinations, minimized symptoms, or used stigmatizing language, including in the newest and largest models. These failures reflect structural limitations such as lack of memory, insufficient contextual reasoning, and training-related biases. Prompt engineering alone is therefore insufficient for safe AI-mediated psychotherapy; clinician-guided fine-tuning, integrated safety mechanisms, and system-level oversight will be required. This work provides early evidence motivating deeper clinician-led evaluation and safety-oriented model development.

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Rationale and guidance for implementing the continual reassessment method for dose-finding in controlled human infection model studies

Weerasinghe, C.; Osowicki, J.; Simpson, J. A.; Crocker-Buque, T.; McCarthy, J.; Williams, E.; Price, D. J.

2026-07-17 infectious diseases 10.64898/2026.07.16.26358128 medRxiv
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Controlled human infection models (CHIMs) are increasingly used in infectious disease research to study pathogen dynamics and evaluate interventions under controlled conditions. However, these studies are resource-intensive and involve ethical and safety constraints, making efficient study design critical. Dose-finding is a key early component in CHIMs, where the aim is to identify a challenge dose that achieves a target infection probability. Traditional rule-based designs are commonly used but can be inefficient, motivating the use of model-based adaptive approaches such as the Bayesian Continual Reassessment Method (CRM). Although CRM has been extensively studied and widely adopted in Phase I oncology trials for identifying the maximum tolerated dose of therapeutics, its application in CHIM settings remains limited, particularly when the endpoint of interest is infection. This tutorial provides step-by-step guidance for implementing a Bayesian CRM in dose-finding CHIMs, using an oropharyngeal Neisseria gonorrhoeae challenge as a motivating case study. The framework outlines key design components, including dose-grid specification, dose-response model, prior elicitation, Bayesian updating, decision rules, and stopping criteria, with particular emphasis on a clinically interpretable parameterisation. Trial operating characteristics are evaluated through simulation studies under multiple dose-response scenarios and prior-predictive analyses, and compared with a commonly used '3+3' type rule-based design. This work highlights the advantages of Bayesian model-based designs for dose-finding in CHIMs over classic rule-based designs and provides a structured, reproducible framework for implementing CRM, supporting their application in future CHIM studies.

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Comparative Efficacy of Vancomycin and Fidaxomicin Regimens for the Prevention of Recurrent Clostridioides difficile Infection: A Systematic Review and Network Meta-Analysis of Randomized Controlled Trials

Prosty, C.; Butler-Laporte, G.; Brophy, J.; Frenette, C.; Loo, V.; Coburn, B.; Hota, S.; Longtin, Y.; Kong, L.; Muller, M.; Steiner, T.; Valiquette, L.; Daneman, N.; Daley, P.; Nott, C.; MacFadden, D. R.; Kandel, C.; Chen, Y.; Perez- Patrigeon, S.; Lee, T. C.; McDonald, E.

2026-07-17 infectious diseases 10.64898/2026.07.14.26358112 medRxiv
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Background and Aims The optimal treatment for first episodes and first recurrences of Clostridioides difficile infections (CDI) is unknown and there is emerging evidence for pulse and taper (P-T) regimens. Therefore, we sought to estimate the relative efficacy of treatment options. Methods MEDLINE and CENTRAL were searched from database inception to May 21, 2025 and unpublished conference abstracts were searched from recent infectious disease conferences. RCTs on the treatment of first episodes or first recurrences of CDI comparing fixed-dose or P-T regimens of fidaxomicin or vancomycin were included. The primary and secondary outcomes were 40- and 56-day CDI recurrence, respectively. A random-effects network meta-analysis on the risk ratio (RR) scale was conducted using a standard regimen (10-14 days) of vancomycin as the comparator. Treatments were ranked using the surface under the cumulative ranking curve (SUCRA). Results 8 RCTs were included comprising a total of 2181 patients. For 40-day recurrence, fidaxomicin P-T had the highest probability of ranking best (RR=0.10, 95%Confidence Interval [95%CI]=0.10-0.49, SUCRA=1.00), followed by vancomycin P-T (RR=0.49, 95%CI=0.32-0.76, SUCRA=0.61), fixed-dose fidaxomicin (RR=0.61, 95%CI=0.49-0.76, SUCRA=0.39), and, finally, fixed-dose of vancomycin (SUCRA=0.00). The treatments ranked in the same order for 56-day recurrence, though only 3 RCTs reported on this timepoint. Conclusion Vancomycin P-T, fidaxomicin P-T, and fixed-dose fidaxomicin were all superior to a fixed-dose vancomycin. Head-to-head comparative effectiveness RCTs are needed to quantify their relative effect sizes of and impact on long-term prevention of recurrent CDI.

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PARIS (Pneumonia: Acute Respiratory Infection +/- Sepsis): a prospective single-centre observational cohort study of hospitalised patients with pneumonia

Nasser, S. T.; Piercy, C. R.; Falinska, A.; O'Sullivan, D. M.; Devonshire, A.; Martinez-Estrada, F.; Huggett, J.; Creagh-Brown, B. C.

2026-07-17 respiratory medicine 10.64898/2026.07.15.26357955 medRxiv
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Introduction Hospitalised community-acquired pneumonia (CAP) is heterogeneous in aetiology, severity, and outcome. Phenotyping and endotyping approaches offer potential to stratify patients biologically and guide targeted therapy, but require well-characterised cohorts with linked biosamples. We describe the PARIS (Pneumonia: Acute Respiratory Infection +/- Sepsis) study: a prospective observational cohort of hospitalised patients with pneumonia, designed to characterise functional outcomes and to provide a biobank for translational immunological research. Methods Adults admitted with CAP to a single NHS district general hospital were enrolled within 24 hours of admission between December 2020 and March 2022. Clinical, functional, and physiological data were collected at enrolment, hospital discharge, and 6-8 week follow-up. Serial blood samples were collected for flow cytometry, transcriptomics, pathogen DNA detection, and plasma biobanking. Results Forty-seven patients were enrolled (15 without and 32 with sepsis [SOFA >=2] at enrolment); 87% met sepsis criteria by 24 hours post enrolment. Most patients (30/47, 64%) were managed as COVID-19, microbiologically confirmed in 27. Mean age was 57 years (SD 16), 70% were male, and baseline comorbidity burden was low. Severity was moderate (median NEWS2 4 at enrolment, rising to 6 by 24 hours post enrolment; p<0.001). Mortality was 4/47 (8.5%), with 44/47 (94%) alive at hospital discharge. Median length of stay was 8 days (IQR 5.5-11). Translational samples were collected from the majority: fresh flow cytometry (44/47, 94%), transcriptomics from the sepsis subgroup (31/32, 97%), pathogen DNA sampling (35 samples received across study timepoints; see Table 5), and stored plasma (29/47, 62%). The primary outcome of functional decline (Barthel score decrease >=1.85) occurred in only 1/29 patients with paired assessments (3.4%). Persistent CRP elevation (>3 mg/L) at 6-8 week follow-up was present in 16/31 (52%) survivors with available data. Conclusions The PARIS cohort provides a well-characterised clinical platform and linked biobank to support translational studies of pneumonia and sepsis. The low rate of functional decline reflects the younger, lower-comorbidity, COVID-predominant population recruited. Primary protocol endpoints were not achieved owing to pandemic-related disruption. Data and samples underpin a programme of linked translational studies.

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Photobiomodulation promotes wound healing and functional improvement following lumbar decompression surgery: a double-blinded, placebo-controlled study

Rivera, J.; Zhou, Y.; Sak, L.; Pudewa, F.; Lee, J.; Yamamoto, M. T.; Yoo, H.; Lum, M.; Zhang, M.; Patel, A.; Vandenberghe, L. E.; Fenn, S. K.; Wang, Y.; Bailey, B.; Holley, S. M.; Vivas, A. C.; Holly, L. T.; Lu, D. C.

2026-07-17 surgery 10.64898/2026.07.15.26357882 medRxiv
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Objective: Photobiomodulation therapy has emerged as a promising modality to facilitate scar healing and pain management in dermatology and plastic surgery. However, its role in postoperative care following spine surgeries remains understudied. This double-blinded, placebo-controlled study aimed to investigate the effects of photobiomodulation in patients with chronic lower back pain undergoing lumbar decompression, with postoperative wound healing as the primary outcome and pain reduction and functional recovery as secondary outcomes. Methods: Patients were randomized to receive either active photobiomodulation braces (N=13) or placebo braces (N=12). Follow-up assessments were performed at 2, 4, 6, 8, and 12 weeks postoperatively. Outcomes included wound healing (Stony Brook Scar Evaluation Scale), back and leg pain (Visual Analog Scale), quality of life (EuroQol 5D), and functional status (Oswestry Disability Index). Results: Compared to the placebo group, the photobiomodulation treatment group had a 4.12-fold cumulative improvement in final scar scores, with significant between-group differences at postoperative weeks 6, 8, and 12 (p = 0.0062, 0.010, 0.042). Among patients with severe preoperative disability, treatment resulted in a 1.89-fold faster improvement in back pain (p=0.025) and a 1.80-fold faster improvement in ODI scores (p=0.025); and superior treatment effect on wound healing were again observed at weeks 6, 8, and 12. Among patients with poor initial scars, treatment led to a significantly better scar outcome than placebo at week 6 and a 1.94-fold faster EQ5D improvement (p=0.052), with significant gains observed as early as two weeks after surgery. There were no adverse events associated with photobiomodulation treatment. Conclusions: Photobiomodulation significantly promoted postoperative wound healing following lumbar decompression surgery, with therapeutic benefits preserved even in patients with poor baseline scar scores and functional impairment. This indicates that the efficacy of photobiomodulation is not limited by the initial scar condition or disability, supporting its broad clinical applicability. Additionally, patients with severe preoperative disability experienced greater benefits from photobiomodulation than placebo, including faster reduction in back pain and more rapid improvement in functional capacity, highlighting its role in postoperative pain management and rehabilitation. These therapeutic effects are likely mediated by photobiomodulation-induced reduction of inflammation and enhancement of tissue repair. Together, this study suggests that photobiomodulation can be a promising adjunct therapy to facilitate postoperative recovery in patients undergoing spine surgery.

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General Practice Perspectives on Post-Infection Conditions: Scoping Review and UK Survey

Aung, K. W.; Scuffell, J.; Podlasek, A.; Engamba, S.; Jones, F.; Edwards, A.; Chew-Graham, C. A.; Sanyaolu, L.; Busse-Morris, M.

2026-07-17 primary care research 10.64898/2026.07.15.26358157 medRxiv
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Background Post-infection conditions (PICs), such as Long Covid, are associated with heterogeneous, fluctuating symptoms that profoundly affect daily functioning. Despite moderate-certainty evidence from the NIHR-funded LISTEN trial (COV-LT2-0009) that personalised self management support improves outcomes and may reduce societal and economic impacts of Long Covid, many people living with PICs still receive condition-specific services, generic advice, or stand-alone digital tools that do not address their complex needs. Aim To map care approaches in general practice and synthesise UK evidence for PIC management. Design and setting Scoping review and online survey. Method A two-phase study was conducted: (1) a scoping review of UK evidence on PIC management in general practice; and (2) a supplementary online survey of practitioners working in UK general practice to provide contextual insights. Results The scoping review identified 32 studies focused on Long Covid. One study included a comparator group (ME/CFS). Study populations were predominantly white ethnicity and female. Evidence for non-Covid PICs in UK general practice was largely absent. The supplementary survey (n=46) provided preliminary practice-level insights. Healthcare practitioners reported varied PIC presentations, diagnostic uncertainty, limited referral pathways, inequitable access, and low confidence in managing PICs. Conclusion Evidence informing PIC management in UK general practice remains predominantly Long Covid-focused and may not reflect the range of PICs encountered in practice. While survey findings are preliminary and require confirmation in larger samples, they highlight uncertainty around PIC management. Further research is needed to evaluate whether existing Long Covid pathways should be expanded or complemented by broader PIC models. Keywords general practice; Long Covid; self-management; post-viral syndromes

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Microvascular Thrombosis and Acute Kidney Injury in COVID-19: A Systematic Review and Quantitative Analysis

Duarte, C. A.; Uscocovich, V. S. M.; Misael, I.; Duarte, P. D. A. C.; Sestito, E. B.; Da SIlva, P. N.

2026-07-17 nephrology 10.64898/2026.07.14.26357748 medRxiv
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Abstract Objective: To synthesize the available evidence on the association between SARS-CoV-2-related microvascular thrombosis and acute kidney injury (AKI), with emphasis on renal outcomes, mortality, and renal replacement therapy requirements. Methods: This systematic review followed the PRISMA 2020 statement and was prospectively registered in PROSPERO (CRD420251132701). PubMed/MEDLINE, Scopus, and Embase were searched for systematic reviews, including meta-analyses, and umbrella reviews investigating the association between SARS-CoV-2-related microvascular thrombosis and acute kidney injury. Two reviewers independently performed study selection, data extraction, and methodological quality assessment using AMSTAR-2 and ROBIS. Evidence was synthesized through a structured narrative synthesis supported by quantitative data extracted from the included reviews. Results: Six evidence syntheses evaluating kidney involvement, thrombotic events, and microvascular mechanisms in COVID-19 were included. AKI incidence was 9.2% (95%CI 4.6-13.9) among hospitalized patients and 32.6% (95%CI 8.5-56.6) among critically ill patients. In children with multisystem inflammatory syndrome associated with SARS-CoV-2, AKI incidence was 20% (95%CI 14-28). Microvascular or thrombotic events were associated with adverse renal outcomes (OR 2.14; 95%CI 1.32-3.48). AKI was associated with increased mortality (OR 4.68; 95%CI 1.06-20.70) and greater likelihood of renal replacement therapy requirement (OR 2.87; 95%CI 1.45-5.68). The certainty of evidence ranged from moderate to high for the principal outcomes. Conclusion: Current evidence supports an important association between microvascular thrombotic injury and COVID-19-associated AKI. These findings reinforce the relevance of endothelial dysfunction and thromboinflammatory pathways in kidney involvement during COVID-19 and highlight the need for early renal monitoring, risk stratification, and kidney-protective strategies in high-risk patients. Keywords: COVID-19; Acute Kidney Injury; Microvascular Thrombosis; SARS-CoV-2; Renal Replacement Therapy; Systematic Review

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Portable Ultra-Low Field MRI Deep-Learning Algorithms for White Matter Lesion Segmentation Improve Accuracy and Reflect Clinical Disability in Multiple Sclerosis

Thommana, A. A.; Donnay, C. A.; Norato, G.; Gaitan, M. I.; Griffanti, L.; Nair, G.; Reich, D. S.; Okar, S. V.

2026-07-17 neurology 10.64898/2026.07.15.26357954 medRxiv
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White matter lesion (WML) identification, assessment, and characterization using magnetic resonance imaging (MRI) are fundamental for diagnosis and monitoring of multiple sclerosis (MS). Portable ultra-low field (pULF) MRI at 64 millitesla (mT) has been shown to visualize WML with at least one dimension greater than 4 mm. An automated WML segmentation tool catered to pULF-MRI can provide standardized and accurate quantitative measurements of WML volume. In this study, we sought to investigate and compare the accuracy of machine-learning (ML) and deep-learning (DL) pULF MRI segmentation tools. Same-day paired pULF (64mT) and high-field (HF, 3T) MRI scans from 84 adults with MS or suspected-MS (mean age {+/-} SD: 48 {+/-} 13, 62 females) included T2-FLAIR and T1w images. Reference WML segmentations were manually annotated on pULF T2-FLAIR for all scans, with WML confirmed with registered HF T2-FLAIR. HF reference WML segmentations were created. Four automated segmentation methods were applied to pULF scans: Method for Inter-Modal Segmentation Analysis (MIMoSA), an ML algorithm trained on HF WML masks; WMH-SynthSeg, a convolutional neural network model with flexible segmentation capabilities across field strengths and resolution; nnU-Net, a DL algorithm trained on pULF reference WML masks; and Pseudo-Label Assisted nnU-Net (PLAn), a DL algorithm pre-trained on HF reference WML masks and refined with 64mT reference WML masks. Two models were trained with nnU-Net, one using T2-FLAIR images only (nnU-Net-FL) and one using T1w and T2-FLAIR images (nnU-Net-FL/T1). The same was done with PLAn, creating PLAn-FL and PLAn-FL/T1. The six automated WML segmentation outputs were compared to the manual segmentations to determine Dice Similarity Coefficient (DSC) scores. Associations of WML volume estimates with clinical measures were investigated. DSC scores with pULF reference WML masks from PLAn-FL (DSC mean {+/-} SD: 0.50 {+/-} 0.24) outperformed MIMoSA (0.24 {+/-} 0.20, p < 0.0001), WMH-SynthSeg (0.30 {+/-} 0.18, p < 0.0001), nnU-Net-FL (0.41 {+/-} 0.24, p < 0.0001), and nnU-Net-FL/T1 (0.41 {+/-} 0.26, p = 0.0004). Worse Expanded Disability Status Scale (EDSS) and Scripps Neurologic Rating Scale (SNRS) scores were correlated with higher WML volumes in the pULF and HF reference masks. They were also correlated with WML volumes derived from WHM-SynthSeg, nnU-Net-FL, nnU-Net-FL/T1, PLAn-FL, and PLAn-FL/T1, but not MIMoSA. After adjusting for age, WHM-SynthSeg, nnU-Net FL, nnU-Net-FL/T1, PLAn-FL, and PLAn-FL/T1 had significant associations with EDSS and SNRS scores. nnU-Net and PLAn performed best in segmenting WML on pULF-MRI at 64 mT, providing accurate quantitative estimates of WML burden. Moreover, WML volumes estimated by these algorithms were associated with clinical measures of disability, underscoring their utility for reflecting clinical and radiological disease severity. Given pULF-MRI's mobility and lower cost, these findings highlight its relevance in clinical trials, particularly in involving more participants who face logistical constraints and barriers.

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Comparing different neuroimaging modalities for quantification of the cholinergic system in Parkinson's disease

d'Angremont, E.; Marschall, T. M.; Renken, R. J.; Sommer, I. E.

2026-07-17 neurology 10.64898/2026.07.15.26357522 medRxiv
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Introduction Parkinson's disease (PD) is a multifactorial disorder, affecting multiple neurotransmitter systems, including the cholinergic system. Cholinergic denervation is heterogeneous across patients and difficult to predict based on clinical presentation. In this study, we assessed the sensitivity of structural MRI (sMRI) and functional MRI (fMRI) to cholinergic degeneration related to PD and to cognitive functioning in PD. We compared our results to results from previously reported [18F]Fluoroethoxybenzovesamicol ([18F]FEOBV) PET imaging, which is considered the gold standard for cholinergic imaging. Methods 34 PD patients and 10 healthy controls underwent structural T1-weighted MRI. A subset of 14 patients and 9 controls also underwent resting-state fMRI. We extracted the bilateral volumes of the nucleus basalis of Meynert (NBM) from the sMRI images. Functional connectivity (FC) from the NBM to the cortex (NBM-FC) was determined using fMRI data. Principal component analysis (PCA) was applied to reduce the dimensionality of the NBM-FC images. We assessed performances for NBM-FC in distinguishing patients from controls using stepwise logistic regression. Similarly, NBM volume was used using logistic regression. Furthermore, the relation between these measures and cognitive function in several domains was investigated with (stepwise) linear regression. Leave-one-out cross validation (LOOCV) and bootstrapping was performed to assess robustness of the results. Results NBM-FC was well able to discriminate patients from controls with an AUC of 0.84 (95% CI: 0.62-1). NBM volume showed lower performance, but was still better than chance: AUC: 0.75 (95% CI: 0.57-0.93). Significant correlations were found between 1) cognition in the attentional domain and NBM-FC (r=0.63; p=.015) and 2) global cognition and NBM volume (r=0.55, p=.001). These results were inferior to those previously reported using [18F]FEOBV tracer uptake (see Chapter 6). Bootstrapping revealed that NBM volume of only the left hemisphere was stably related to PD diagnosis and global cognition in PD patients. We found that a lower NBM-FC in specific brain areas, including the fusiform gyrus, supramarginal gyrus and dorsolateral prefrontal cortex, was related to PD diagnosis. Bootstrapping revealed no stable NBM-FC pattern related to attention. Conclusion Although MRI results were slightly inferior to [18F]FEOBV PET data, MRI may provide a cheaper and more widely available alternative for cholinergic imaging. We recommend testing the utility of MRI as predictor and monitor of cholinergic treatment effect in a longitudinal study.